What You Give Up by Booking Flights and Hotels Separately

Booking flights and accommodation separately usually looks cheaper, and the comparison ignores a protection that has real value when things go wrong.
What makes something a package
In most regulated markets, combining two or more travel components — transport, accommodation, car hire, or a significant other service — for the same trip through one trader creates a package.
This includes some online bookings where components are combined at the point of sale, even where separate suppliers provide them.
Linked travel arrangements, where you are directed to a second booking shortly after the first, carry lesser but non-zero protection.
What package protection provides
Insolvency protection, meaning that if the organiser fails you are repatriated and refunded. This is the protection that separately booked components entirely lack.
The organiser is responsible for the performance of the whole package, so a problem with the hotel is the organiser's problem rather than yours to resolve abroad.
Rights to a price reduction or compensation where services are not as described.
Rights on cancellation and on significant changes made by the organiser before departure.
The comparison to make
Price the package against the components booked separately, and consider what happens if an airline or hotel fails.
For an expensive or long-haul trip, the protection is worth a meaningful premium.
For a short trip with cheap components, it may not be.
Other protections that overlap
Paying by credit card gives protection on purchases in some jurisdictions, which can cover supplier failure.
Travel insurance may cover some scenarios and typically excludes supplier insolvency unless a specific extension is bought.
Check what you actually have rather than assuming you are covered twice.
Practical points
Keep the confirmation showing the protection scheme reference.
Read what the package includes precisely — transfers, meals, bag allowance — since the price comparison depends on it.
Where problems occur during the trip, report them to the organiser's representative immediately and in writing, since claims frequently require you to have given the organiser a chance to fix it.
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